PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0125s0090.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family E2F/DP
Protein Properties Length: 475aa    MW: 52795.6 Da    PI: 4.6388
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0125s0090.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP862.8e-27151216171
                 E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                             r+++sL+llt+kf++l++++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+i+wkg
  SapurV1A.0125s0090.2.p 151 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 216
                             6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-29148218IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.45E-17151214IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.3E-34151216IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.0E-24153216IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146602.20E-47228334No hitNo description
SuperFamilySSF1440741.94E-33230334No hitNo description
PfamPF164211.7E-33233332IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MSNSQAQNNQ SMKQPQQSSM QSHATNQRQH QQPLLFSSMK PPFLPPGDYH RFGDDQRRAV  60
SDHEVEGIVV KPPTLKRKSD AADHQGESSD WNAGHGYMEV VTSPLQTPVS GKGGKTPKTS  120
RLTKSSKSGS QSAAAALGSP GNNLTPTGPC RYDSSLGLLT KKFINLIKHA EDGILDLNKA  180
AETLEVQKRR IYDITNVLEG IGLIEKKLKN RIQWKGLDVS RPGEADDNNV ATLQAEVENL  240
TMEERRLDEQ TREMQERLRD LSEDENNQKW LFVTEEDIKS LPGFQNETLI AIKAPHGTTL  300
EVPDPDEAVD YPQRRYRIVL RSTMGPIDVY LVSQFEEKIE DIQGVEPPSC YPSTSGFDEN  360
PATSMVMEES RGEEVEMQEQ DGHRMCSDLN TAHDFVSGIM KIVPSDVDSD ADYWLLSDAG  420
VSITDMWRNE PVVEWNDLDT LHNDYAMPNV CTPHPQTPPS NPTEVPPGTN KSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A6e-25146217274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1795060.0AY179506.1 Populus alba E2F mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384787.10.0E2F transcription factor-1 family protein
SwissprotQ9FV711e-172E2FB_ARATH; Transcription factor E2FB
TrEMBLU5GK730.0U5GK73_POPTR; E2F transcription factor-1 family protein
STRINGPOPTR_0004s21100.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-159E2F transcription factor 1